Updating Java configuration in /Library/Frameworks/R.framework/Resources JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm JNI cpp flags : -I(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin Java library path: (JAVA_HOME)/lib/server
JAVA_HOME : /Library/Java/JavaVirtualMachines/jdk-13.jdk/Contents/Home framework R -Wl,-framework -Wl,CoreFoundation Java home path : /Library/Java/JavaVirtualMachines/jdk-13.jdk/Contents/Homeĭetected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwinĭetected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvmĬlang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Library/Java/JavaVirtualMachines/jdk-13.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/jdk-13.jdk/Contents/Home/include/darwin -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c conftest.c -o conftest.oĬlang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o conftest.so conftest.o -L/Library/Java/JavaVirtualMachines/jdk-13.jdk/Contents/Home/lib/server -ljvm -F/Library/Frameworks/R.framework/. If it helps, this is the output from javareconf This is confusing, as I thought the javareconf command was supposed to take care of the necessary environment variables, so I'm not sure why it won't work. Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so )Įrror: unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so':ĭlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rJava/libs/rJava.so, 6): Library not loaded: /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server/libjvm.dylib onLoad failed in loadNamespace() for 'rJava', details:Ĭall: dyn.load(file, DLLpath = DLLpath. When I try to load the rJava library, this is the errorĮrror: package or namespace load failed for ‘rJava’:
I tried reinstalling rJava, but that also didn't help. I checked the traceback of the XLConnect library error to confirm that the problem is rJava.
Java HotSpot(TM) 64-Bit Server VM (build 13+33, mixed mode, sharing) Java(TM) SE Runtime Environment (build 13+33) Everything worked apart from XLConnect, because it has that pesky java dependancy, so I installed JRE first and the JDK.
Install rjava in r install#
So I have a clean install of macOS, I installed R and Rstudio, then started to install the packages I use.
Install rjava in r mac#
Yesterday, however, I decided it was time to do a clean install of my mac for reasons that I won't go into. I was previously using XLConnect as part of a notebook successfully. This might be more of a general R environment problem, but I came across it while trying to load XLConnect after a clean reinstall, so I figured I'd try here.
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